Rotation Equivariant CNNs for Digital Pathology

Bastiaan S. Veeling, Jasper Linmans, Jim Winkens, Taco Cohen, Max Welling
6/8/2018
cs.CVcs.LGstat.ML

Official code: basveeling/pcam (529 stars, last commit 2024-01-31). 1 more implementation below.

Abstract

We propose a new model for digital pathology segmentation, based on the observation that histopathology images are inherently symmetric under rotation and reflection. Utilizing recent findings on rotation equivariant CNNs, the proposed model leverages these symmetries in a principled manner. We present a visual analysis showing improved stability on predictions, and demonstrate that exploiting rotation equivariance significantly improves tumor detection performance on a challenging lymph node metastases dataset. We further present a novel derived dataset to enable principled comparison of machine learning models, in combination with an initial benchmark. Through this dataset, the task of histopathology diagnosis becomes accessible as a challenging benchmark for fundamental machine learning research.

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Code Implementations(2)

basveeling/pcamOfficial100%

The PatchCamelyon (PCam) deep learning classification benchmark.

529108PythonMay 28, 20182 years agoNOASSERTION
benchmarkdatasetdeep-learningdeep-learning-datasetspathology

Roto-reflection equivariant CNNs for Keras as presented in B. S. Veeling, J. Linmans, J. Winkens, T. Cohen, M. Welling. "Rotation Equivariant CNNs for Digital Pathology".

8739PythonMay 30, 20186 years agoNOASSERTION

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Cite this paper

@article{veeling2018rotation,
  title  = {Rotation Equivariant CNNs for Digital Pathology},
  author = {Bastiaan S. Veeling and Jasper Linmans and Jim Winkens and Taco Cohen and Max Welling},
  year   = {2018},
  eprint = {1806.03962},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/1806.03962}
}

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