Boltzmann Generators -- Sampling Equilibrium States of Many-Body Systems with Deep Learning

Frank Noé, Simon Olsson, Jonas Köhler, Hao Wu
12/4/2018
stat.MLcond-mat.stat-mechcs.LG

Official code: noegroup/paper_boltzmann_generators (94 stars, CC-BY-4.0, last commit 2021-12-06).

Abstract

Computing equilibrium states in condensed-matter many-body systems, such as solvated proteins, is a long-standing challenge. Lacking methods for generating statistically independent equilibrium samples in "one shot", vast computational effort is invested for simulating these system in small steps, e.g., using Molecular Dynamics. Combining deep learning and statistical mechanics, we here develop Boltzmann Generators, that are shown to generate unbiased one-shot equilibrium samples of representative condensed matter systems and proteins. Boltzmann Generators use neural networks to learn a coordinate transformation of the complex configurational equilibrium distribution to a distribution that can be easily sampled. Accurate computation of free energy differences and discovery of new configurations are demonstrated, providing a statistical mechanics tool that can avoid rare events during sampling without prior knowledge of reaction coordinates.

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9436Python, Jupyter NotebookOct 20, 20184 years agoCC-BY-4.0

Cite this paper

@article{no2018boltzmann,
  title  = {Boltzmann Generators -- Sampling Equilibrium States of Many-Body Systems with Deep Learning},
  author = {Frank Noé and Simon Olsson and Jonas Köhler and Hao Wu},
  year   = {2018},
  eprint = {1812.01729},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/1812.01729}
}

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