Interpretable Outcome Prediction with Sparse Bayesian Neural Networks in Intensive Care

Hiske Overweg, Anna-Lena Popkes, Ari Ercole, Yingzhen Li, José Miguel Hernández-Lobato +2 more
5/7/2019
cs.LGstat.ML

Official code: microsoft/horseshoe-bnn (61 stars, last commit 2023-06-27).

Abstract

Clinical decision making is challenging because of pathological complexity, as well as large amounts of heterogeneous data generated as part of routine clinical care. In recent years, machine learning tools have been developed to aid this process. Intensive care unit (ICU) admissions represent the most data dense and time-critical patient care episodes. In this context, prediction models may help clinicians determine which patients are most at risk and prioritize care. However, flexible tools such as artificial neural networks (ANNs) suffer from a lack of interpretability limiting their acceptability to clinicians. In this work, we propose a novel interpretable Bayesian neural network architecture which offers both the flexibility of ANNs and interpretability in terms of feature selection. In particular, we employ a sparsity inducing prior distribution in a tied manner to learn which features are important for outcome prediction. We evaluate our approach on the task of mortality prediction using two real-world ICU cohorts. In collaboration with clinicians we found that, in addition to the predicted outcome results, our approach can provide novel insights into the importance of different clinical measurements. This suggests that our model can support medical experts in their decision making process.

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A Bayesian Neural Network with a horseshoe prior for improved interpretability

6115PythonMar 7, 20193 years agoNOASSERTION

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@article{overweg2019interpretable,
  title  = {Interpretable Outcome Prediction with Sparse Bayesian Neural Networks in Intensive Care},
  author = {Hiske Overweg and Anna-Lena Popkes and Ari Ercole and Yingzhen Li and José Miguel Hernández-Lobato and Yordan Zaykov and Cheng Zhang},
  year   = {2019},
  eprint = {1905.02599},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/1905.02599}
}

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