In search of the most efficient and memory-saving visualization of high dimensional data

Abstract

Interactive exploration of large, multidimensional datasets plays a very important role in various scientific fields. It makes it possible not only to identify important structural features and forms, such as clusters of vertices and their connection patterns, but also to evaluate their interrelationships in terms of position, distance, shape and connection density. We argue that the visualization of multidimensional data is well approximated by the problem of two-dimensional embedding of undirected nearest-neighbor graphs. The size of complex networks is a major challenge for today's computer systems and still requires more efficient data embedding algorithms. Existing reduction methods are too slow and do not allow interactive manipulation. We show that high-quality embeddings are produced with minimal time and memory complexity. We present very efficient IVHD algorithms (CPU and GPU) and compare them with the latest and most popular dimensionality reduction methods. We show that the memory and time requirements are dramatically lower than for base codes. At the cost of a slight degradation in embedding quality, IVHD preserves the main structural properties of the data well with a much lower time budget. We also present a meta-algorithm that allows the use of any unsupervised data embedding method in a supervised manner.