Unlocking the Heart Using Adaptive Locked Agnostic Networks

Sylwia Majchrowska, Anders Hildeman, Philip Teare, Tom Diethe
9/21/2023
cs.CVcs.AI

No official code found. Best implementation: AstraZeneca/UnlockingHeart (8 stars, last commit 2023-09-22).

Abstract

Supervised training of deep learning models for medical imaging applications requires a significant amount of labeled data. This is posing a challenge as the images are required to be annotated by medical professionals. To address this limitation, we introduce the Adaptive Locked Agnostic Network (ALAN), a concept involving self-supervised visual feature extraction using a large backbone model to produce anatomically robust semantic self-segmentation. In the ALAN methodology, this self-supervised training occurs only once on a large and diverse dataset. Due to the intuitive interpretability of the segmentation, downstream models tailored for specific tasks can be easily designed using white-box models with few parameters. This, in turn, opens up the possibility of communicating the inner workings of a model with domain experts and introducing prior knowledge into it. It also means that the downstream models become less data-hungry compared to fully supervised approaches. These characteristics make ALAN particularly well-suited for resource-scarce scenarios, such as costly clinical trials and rare diseases. In this paper, we apply the ALAN approach to three publicly available echocardiography datasets: EchoNet-Dynamic, CAMUS, and TMED-2. Our findings demonstrate that the self-supervised backbone model robustly identifies anatomical subregions of the heart in an apical four-chamber view. Building upon this, we design two downstream models, one for segmenting a target anatomical region, and a second for echocardiogram view classification.

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Code Implementations(1)

This repository accompanies our paper Unlocking the Heart Using Adaptive Locked Agnostic Networks and enables replication of the key results.

80PythonJul 13, 20233 years ago
alanechocardiographysegmentationself-supervised-learningvisual-transformers

Cite this paper

@article{majchrowska2023unlocking,
  title  = {Unlocking the Heart Using Adaptive Locked Agnostic Networks},
  author = {Sylwia Majchrowska and Anders Hildeman and Philip Teare and Tom Diethe},
  year   = {2023},
  eprint = {2309.11899},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2309.11899v1}
}

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