Decoding Neuronal Networks: A Reservoir Computing Approach for Predicting Connectivity and Functionality

Ilya Auslender, Giorgio Letti, Yasaman Heydari, Clara Zaccaria, Lorenzo Pavesi
11/6/2023
q-bio.QMcs.LGeess.SP

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Abstract

In this study, we address the challenge of analyzing electrophysiological measurements in neuronal networks. Our computational model, based on the Reservoir Computing Network (RCN) architecture, deciphers spatio-temporal data obtained from electrophysiological measurements of neuronal cultures. By reconstructing the network structure on a macroscopic scale, we reveal the connectivity between neuronal units. Notably, our model outperforms common methods like Cross-Correlation and Transfer-Entropy in predicting the network's connectivity map. Furthermore, we experimentally validate its ability to forecast network responses to specific inputs, including localized optogenetic stimuli.

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Cite this paper

@article{auslender2023decoding,
  title  = {Decoding Neuronal Networks: A Reservoir Computing Approach for Predicting Connectivity and Functionality},
  author = {Ilya Auslender and Giorgio Letti and Yasaman Heydari and Clara Zaccaria and Lorenzo Pavesi},
  year   = {2023},
  eprint = {2311.03131},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2311.03131v3}
}

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