A Quadrature Approach for General-Purpose Batch Bayesian Optimization via Probabilistic Lifting

Masaki Adachi, Satoshi Hayakawa, Martin Jørgensen, Saad Hamid, Harald Oberhauser +1 more
4/18/2024
cs.LGmath.NAstat.ML

No official code found. Best implementation: ma921/SOBER (34 stars, BSD-3-Clause, last commit 2025-12-10).

Abstract

Parallelisation in Bayesian optimisation is a common strategy but faces several challenges: the need for flexibility in acquisition functions and kernel choices, flexibility dealing with discrete and continuous variables simultaneously, model misspecification, and lastly fast massive parallelisation. To address these challenges, we introduce a versatile and modular framework for batch Bayesian optimisation via probabilistic lifting with kernel quadrature, called SOBER, which we present as a Python library based on GPyTorch/BoTorch. Our framework offers the following unique benefits: (1) Versatility in downstream tasks under a unified approach. (2) A gradient-free sampler, which does not require the gradient of acquisition functions, offering domain-agnostic sampling (e.g., discrete and mixed variables, non-Euclidean space). (3) Flexibility in domain prior distribution. (4) Adaptive batch size (autonomous determination of the optimal batch size). (5) Robustness against a misspecified reproducing kernel Hilbert space. (6) Natural stopping criterion.

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Code Implementations(1)

ma921/SOBERCommunity100%
BSD-3-Clause

Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration

342Python, Jupyter NotebookDec 20, 202210 months agoBSD-3-Clause
bayesian-inferencebayesian-optimizationbayesian-quadratureblackbox-optimizationdrug-discovery+6 more

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Cite this paper

@article{adachi2024quadrature,
  title  = {A Quadrature Approach for General-Purpose Batch Bayesian Optimization via Probabilistic Lifting},
  author = {Masaki Adachi and Satoshi Hayakawa and Martin Jørgensen and Saad Hamid and Harald Oberhauser and Michael A. Osborne},
  year   = {2024},
  eprint = {2404.12219},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2404.12219v2}
}

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