Unlocking Guidance for Discrete State-Space Diffusion and Flow Models

Hunter M. Nisonoff, Junhao Xiong, Stephan Allenspach, Jennifer Listgarten
2/12/2026

No official code found. Best implementation: hnisonoff/discrete_guidance (35 stars, MIT, last commit 2025-04-18). 1 more below.

Abstract

Generative models on discrete state-spaces have a wide range of potential applications, particularly in the domain of natural sciences. In continuous state-spaces, controllable and flexible generation of samples with desired properties has been realized using guidance on diffusion and flow models. However, these guidance approaches are not readily amenable to discrete state-space models. Consequently, we introduce a general and principled method for applying guidance on such models. Our method depends on leveraging continuous-time Markov processes on discrete state-spaces, which unlocks computational tractability for sampling from a desired guided distribution. We demonstrate the utility of our approach, Discrete Guidance, on a range of applications including guided generation of small-molecules, DNA sequences and protein sequences.

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Code Implementations(2)

MIT

Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"

354Shell, PythonOct 28, 20241 years agoMIT
MIT

Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"

00Shell, PythonJun 9, 20251 years agoMIT

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Cite this paper

@article{nisonoff2026unlocking,
  title  = {Unlocking Guidance for Discrete State-Space Diffusion and Flow Models},
  author = {Hunter M. Nisonoff and Junhao Xiong and Stephan Allenspach and Jennifer Listgarten},
  year   = {2026},
  eprint = {2406.01572},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/2406.01572},
  journal = {ICLR 2024 2024}
}

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