Inferring the time-varying coupling of dynamical systems with temporal convolutional autoencoders

Josuan Calderon, Gordon J. Berman
6/5/2024
cs.LGq-bio.QM

No official code found. Best implementation: bermanlabemory/Temporal-Autoencoders-For-Causal-Inference-TACI (5 stars, last commit 2025-02-03).

Abstract

Most approaches for assessing causality in complex dynamical systems fail when the interactions between variables are inherently non-linear and non-stationary. Here we introduce Temporal Autoencoders for Causal Inference (TACI), a methodology that combines a new surrogate data metric for assessing causal interactions with a novel two-headed machine learning architecture to identify and measure the direction and strength of time-varying causal interactions. Through tests on both synthetic and real-world datasets, we demonstrate TACI's ability to accurately quantify dynamic causal interactions across a variety of systems. Our findings display the method's effectiveness compared to existing approaches and also highlight our approach's potential to build a deeper understanding of the mechanisms that underlie time-varying interactions in physical and biological systems.

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54Python, Jupyter NotebookJun 4, 20241 years ago

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Cite this paper

@article{calderon2024inferring,
  title  = {Inferring the time-varying coupling of dynamical systems with temporal convolutional autoencoders},
  author = {Josuan Calderon and Gordon J. Berman},
  year   = {2024},
  eprint = {2406.03212},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2406.03212v1}
}

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