Neural P3M: A Long-Range Interaction Modeling Enhancer for Geometric GNNs

Yusong Wang, Chaoran Cheng, Shaoning Li, Yuxuan Ren, Bin Shao +3 more
2/3/2026

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Abstract

Geometric graph neural networks (GNNs) have emerged as powerful tools for modeling molecular geometry. However, they encounter limitations in effectively capturing long-range interactions in large molecular systems. To address this challenge, we introduce Neural P$^3$M, a versatile enhancer of geometric GNNs to expand the scope of their capabilities by incorporating mesh points alongside atoms and reimaging traditional mathematical operations in a trainable manner. Neural P$^3$M exhibits flexibility across a wide range of molecular systems and demonstrates remarkable accuracy in predicting energies and forces, outperforming on benchmarks such as the MD22 dataset. It also achieves an average improvement of 22% on the OE62 dataset while integrating with various architectures.

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@article{wang2026neural,
  title  = {Neural P3M: A Long-Range Interaction Modeling Enhancer for Geometric GNNs},
  author = {Yusong Wang and Chaoran Cheng and Shaoning Li and Yuxuan Ren and Bin Shao and Ge Liu and Pheng-Ann Heng and Nanning Zheng},
  year   = {2026},
  eprint = {2409.17622},
  archivePrefix = {arXiv},
  doi    = {10.48550/arXiv.2409.17622},
  url    = {https://arxiv.org/abs/2409.17622},
  journal = {NEURIPS 2024 2024}
}

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