From Logits to Hierarchies: Hierarchical Clustering made Simple

Emanuele Palumbo, Moritz Vandenhirtz, Alain Ryser, Imant Daunhawer, Julia E. Vogt
2/12/2026

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Abstract

The hierarchical structure inherent in many real-world datasets makes the modeling of such hierarchies a crucial objective in both unsupervised and supervised machine learning. While recent advancements have introduced deep architectures specifically designed for hierarchical clustering, we adopt a critical perspective on this line of research. Our findings reveal that these methods face significant limitations in scalability and performance when applied to realistic datasets. Given these findings, we present an alternative approach and introduce a lightweight method that builds on pre-trained non-hierarchical clustering models. Remarkably, our approach outperforms specialized deep models for hierarchical clustering, and it is broadly applicable to any pre-trained clustering model that outputs logits, without requiring any fine-tuning. To highlight the generality of our approach, we extend its application to a supervised setting, demonstrating its ability to recover meaningful hierarchies from a pre-trained ImageNet classifier. Our results establish a practical and effective alternative to existing deep hierarchical clustering methods, with significant advantages in efficiency, scalability and performance.

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Cite this paper

@article{palumbo2026from,
  title  = {From Logits to Hierarchies: Hierarchical Clustering made Simple},
  author = {Emanuele Palumbo and Moritz Vandenhirtz and Alain Ryser and Imant Daunhawer and Julia E. Vogt},
  year   = {2026},
  eprint = {2410.07858},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/2410.07858},
  journal = {ICML 2024 2024}
}

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