Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling

Yuanqi Du, Michael Plainer, Rob Brekelmans, Chenru Duan, Frank No'e +3 more
10/1/2024

No official code found. Best implementation: plainerman/Variational-Doob (60 stars, MIT, last commit 2025-03-26).

Abstract

Rare event sampling in dynamical systems is a fundamental problem arising in the natural sciences, which poses significant computational challenges due to an exponentially large space of trajectories. For settings where the dynamical system of interest follows a Brownian motion with known drift, the question of conditioning the process to reach a given endpoint or desired rare event is definitively answered by Doob's h-transform. However, the naive estimation of this transform is infeasible, as it requires simulating sufficiently many forward trajectories to estimate rare event probabilities. In this work, we propose a variational formulation of Doob's h-transform as an optimization problem over trajectories between a given initial point and the desired ending point. To solve this optimization, we propose a simulation-free training objective with a model parameterization that imposes the desired boundary conditions by design. Our approach significantly reduces the search space over trajectories and avoids expensive trajectory simulation and inefficient importance sampling estimators which are required in existing methods. We demonstrate the ability of our method to find feasible transition paths on real-world molecular simulation and protein folding tasks.

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Code Implementations(1)

MIT

Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling

608Python, Jupyter NotebookApr 18, 20241 years agoMIT
machine-learningneural-networkstransition-pathsvariational-method

Cite this paper

@article{du2024doobs,
  title  = {Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling},
  author = {Yuanqi Du and Michael Plainer and Rob Brekelmans and Chenru Duan and Frank No'e and Carla P. Gomes and Alán Aspuru-Guzik and Kirill Neklyudov},
  year   = {2024},
  eprint = {2410.07974},
  archivePrefix = {arXiv},
  doi    = {10.48550/arXiv.2410.07974},
  url    = {https://arxiv.org/abs/2410.07974},
  journal = {NEURIPS 2024 2024}
}

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