Disentangled PET Lesion Segmentation

Tanya Gatsak, Kumar Abhishek, Hanene Ben Yedder, Saeid Asgari Taghanaki, Ghassan Hamarneh
11/4/2024
eess.IVcs.CVcs.LG

No official code found. Best implementation: sfu-mial/PET-Disentangler (1 star, PyTorch, last commit 2024-12-20).

Abstract

PET imaging is an invaluable tool in clinical settings as it captures the functional activity of both healthy anatomy and cancerous lesions. Developing automatic lesion segmentation methods for PET images is crucial since manual lesion segmentation is laborious and prone to inter- and intra-observer variability. We propose PET-Disentangler, a 3D disentanglement method that uses a 3D UNet-like encoder-decoder architecture to disentangle disease and normal healthy anatomical features with losses for segmentation, reconstruction, and healthy component plausibility. A critic network is used to encourage the healthy latent features to match the distribution of healthy samples and thus encourages these features to not contain any lesion-related features. Our quantitative results show that PET-Disentangler is less prone to incorrectly declaring healthy and high tracer uptake regions as cancerous lesions, since such uptake pattern would be assigned to the disentangled healthy component.

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Code Implementations(1)

PyTorch

[ISBI '25 Best Paper] Disentangled PET Lesion Segmentation

10Shell, PythonDec 20, 20241 years ago
3d-medical-images3d-medical-imaging-segmentationdisentangled-representationsdisentanglement-learningencoder-decoder+7 more

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Cite this paper

@article{gatsak2024disentangled,
  title  = {Disentangled PET Lesion Segmentation},
  author = {Tanya Gatsak and Kumar Abhishek and Hanene Ben Yedder and Saeid Asgari Taghanaki and Ghassan Hamarneh},
  year   = {2024},
  eprint = {2411.01758},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2411.01758v1}
}

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