Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models

Zeineb Haouari, Jonas Weidner, Yeray Martin-Ruisanchez, Ivan Ezhov, Aswathi Varma +3 more
1/14/2025
cs.CVcs.LG

No official code found. Best implementation: ZeinebZH/TumorNetSolvers (6 stars, PyTorch, last commit 2025-09-05).

Abstract

Glioblastoma, a highly aggressive brain tumor, poses major challenges due to its poor prognosis and high morbidity rates. Partial differential equation-based models offer promising potential to enhance therapeutic outcomes by simulating patient-specific tumor behavior for improved radiotherapy planning. However, model calibration remains a bottleneck due to the high computational demands of optimization methods like Monte Carlo sampling and evolutionary algorithms. To address this, we recently introduced an approach leveraging a neural forward solver with gradient-based optimization to significantly reduce calibration time. This approach requires a highly accurate and fully differentiable forward model. We investigate multiple architectures, including (i) an enhanced TumorSurrogate, (ii) a modified nnU-Net, and (iii) a 3D Vision Transformer (ViT). The nnU-Net achieved the best overall results, excelling in both tumor outline matching and voxel-level prediction of tumor cell concentration. It yielded the lowest MSE in tumor cell concentration compared to ground truth numerical simulation and the highest Dice score across all tumor cell concentration thresholds. Our study demonstrates significant enhancement in forward solver performance and outlines important future research directions.

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PyTorch

Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models

64PythonDec 5, 20241 years agoNOASSERTION
3ddeep-learninghealthcaremedical-imagingnnunet+5 more

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Cite this paper

@article{haouari2025efficient,
  title  = {Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models},
  author = {Zeineb Haouari and Jonas Weidner and Yeray Martin-Ruisanchez and Ivan Ezhov and Aswathi Varma and Daniel Rueckert and Bjoern Menze and Benedikt Wiestler},
  year   = {2025},
  eprint = {2501.08226},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2501.08226v2}
}

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