RFMedSAM 2: Automatic Prompt Refinement for Enhanced Volumetric Medical Image Segmentation with SAM 2

Abstract

Segment Anything Model 2 (SAM 2), a prompt-driven foundation model extending SAM to both image and video domains, has shown superior zero-shot performance compared to its predecessor. Building on SAM's success in medical image segmentation, SAM 2 presents significant potential for further advancement. However, similar to SAM, SAM 2 is limited by its output of binary masks, inability to infer semantic labels, and dependence on precise prompts for the target object area. Additionally, direct application of SAM and SAM 2 to medical image segmentation tasks yields suboptimal results. In this paper, we explore the upper performance limit of SAM 2 using custom fine-tuning adapters, achieving a Dice Similarity Coefficient (DSC) of 92.30% on the BTCV dataset, surpassing the state-of-the-art nnUNet by 12%. Following this, we address the prompt dependency by investigating various prompt generators. We introduce a UNet to autonomously generate predicted masks and bounding boxes, which serve as input to SAM 2. Subsequent dual-stage refinements by SAM 2 further enhance performance. Extensive experiments show that our method achieves state-of-the-art results on the AMOS2022 dataset, with a Dice improvement of 2.9% compared to nnUNet, and outperforms nnUNet by 6.4% on the BTCV dataset.