Leap: Inductive Link Prediction via Learnable TopologyAugmentation

Ahmed E. Samy, Zekarias T. Kefato, Sarunas Girdzijauskas
3/5/2025
cs.LG

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Abstract

Link prediction is a crucial task in many downstream applications of graph machine learning. To this end, Graph Neural Network (GNN) is a widely used technique for link prediction, mainly in transductive settings, where the goal is to predict missing links between existing nodes. However, many real-life applications require an inductive setting that accommodates for new nodes, coming into an existing graph. Thus, recently inductive link prediction has attracted considerable attention, and a multi-layer perceptron (MLP) is the popular choice of most studies to learn node representations. However, these approaches have limited expressivity and do not fully capture the graph's structural signal. Therefore, in this work we propose LEAP, an inductive link prediction method based on LEArnable toPology augmentation. Unlike previous methods, LEAP models the inductive bias from both the structure and node features, and hence is more expressive. To the best of our knowledge, this is the first attempt to provide structural contexts for new nodes via learnable augmentation in inductive settings. Extensive experiments on seven real-world homogeneous and heterogeneous graphs demonstrates that LEAP significantly surpasses SOTA methods. The improvements are up to 22\% and 17\% in terms of AUC and average precision, respectively. The code and datasets are available on GitHub (https://github.com/AhmedESamy/LEAP/)

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Cite this paper

@article{samy2025leap,
  title  = {Leap: Inductive Link Prediction via Learnable TopologyAugmentation},
  author = {Ahmed E. Samy and Zekarias T. Kefato and Sarunas Girdzijauskas},
  year   = {2025},
  eprint = {2503.03331},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2503.03331v1}
}

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