Multi-Prototype Embedding Refinement for Semi-Supervised Medical Image Segmentation

Yali Bi, Enyu Che, Yinan Chen, Yuanpeng He, Jingwei Qu
3/18/2025
eess.IVcs.CV

Official code: Briley-byl123/MPER (17 stars, last commit 2025-06-23).

Abstract

Medical image segmentation aims to identify anatomical structures at the voxel-level. Segmentation accuracy relies on distinguishing voxel differences. Compared to advancements achieved in studies of the inter-class variance, the intra-class variance receives less attention. Moreover, traditional linear classifiers, limited by a single learnable weight per class, struggle to capture this finer distinction. To address the above challenges, we propose a Multi-Prototype-based Embedding Refinement method for semi-supervised medical image segmentation. Specifically, we design a multi-prototype-based classification strategy, rethinking the segmentation from the perspective of structural relationships between voxel embeddings. The intra-class variations are explored by clustering voxels along the distribution of multiple prototypes in each class. Next, we introduce a consistency constraint to alleviate the limitation of linear classifiers. This constraint integrates different classification granularities from a linear classifier and the proposed prototype-based classifier. In the thorough evaluation on two popular benchmarks, our method achieves superior performance compared with state-of-the-art methods. Code is available at https://github.com/Briley-byl123/MPER.

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@article{bi2025multiprototype,
  title  = {Multi-Prototype Embedding Refinement for Semi-Supervised Medical Image Segmentation},
  author = {Yali Bi and Enyu Che and Yinan Chen and Yuanpeng He and Jingwei Qu},
  year   = {2025},
  eprint = {2503.14343},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2503.14343v1}
}

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