Ambiguity-aware Truncated Flow Matching for Ambiguous Medical Image Segmentation

Fanding Li, Xiangyu Li, Xianghe Su, Xingyu Qiu, Suyu Dong +4 more
11/10/2025
cs.CV

No official code found. Best implementation: PerceptionComputingLab/ATFM (18 stars, last commit 2026-03-31).

Abstract

A simultaneous enhancement of accuracy and diversity of predictions remains a challenge in ambiguous medical image segmentation (AMIS) due to the inherent trade-offs. While truncated diffusion probabilistic models (TDPMs) hold strong potential with a paradigm optimization, existing TDPMs suffer from entangled accuracy and diversity of predictions with insufficient fidelity and plausibility. To address the aforementioned challenges, we propose Ambiguity-aware Truncated Flow Matching (ATFM), which introduces a novel inference paradigm and dedicated model components. Firstly, we propose Data-Hierarchical Inference, a redefinition of AMIS-specific inference paradigm, which enhances accuracy and diversity at data-distribution and data-sample level, respectively, for an effective disentanglement. Secondly, Gaussian Truncation Representation (GTR) is introduced to enhance both fidelity of predictions and reliability of truncation distribution, by explicitly modeling it as a Gaussian distribution at $T_{\text{trunc}}$ instead of using sampling-based approximations. Thirdly, Segmentation Flow Matching (SFM) is proposed to enhance the plausibility of diverse predictions by extending semantic-aware flow transformation in Flow Matching (FM). Comprehensive evaluations on LIDC and ISIC3 datasets demonstrate that ATFM outperforms SOTA methods and simultaneously achieves a more efficient inference. ATFM improves GED and HM-IoU by up to $12\%$ and $7.3\%$ compared to advanced methods.

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Code Implementations(1)

[AAAI-26 Oral] Ambiguity-aware Truncated Flow Matching for Ambiguous Medical Image Segmentation

180PythonNov 8, 20256 months ago

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Cite this paper

@article{li2025ambiguityaware,
  title  = {Ambiguity-aware Truncated Flow Matching for Ambiguous Medical Image Segmentation},
  author = {Fanding Li and Xiangyu Li and Xianghe Su and Xingyu Qiu and Suyu Dong and Wei Wang and Kuanquan Wang and Gongning Luo and Shuo Li},
  year   = {2025},
  eprint = {2511.06857},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2511.06857v2}
}

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