KrawtchoukNet: A Unified GNN Solution for Heterophily and Over-smoothing with Adaptive Bounded Polynomials

Huseyin Goksu
11/19/2025
cs.LGeess.SP

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Abstract

Spectral Graph Neural Networks (GNNs) based on polynomial filters, such as ChebyNet, suffer from two critical limitations: 1) performance collapse on "heterophilic" graphs and 2) performance collapse at high polynomial degrees (K), known as over-smoothing. Both issues stem from the static, low-pass nature of standard filters. In this work, we propose `KrawtchoukNet`, a GNN filter based on the discrete Krawtchouk polynomials. We demonstrate that `KrawtchoukNet` provides a unified solution to both problems through two key design choices. First, by fixing the polynomial's domain N to a small constant (e.g., N=20), we create the first GNN filter whose recurrence coefficients are \textit{inherently bounded}, making it exceptionally robust to over-smoothing (achieving SOTA results at K=10). Second, by making the filter's shape parameter p learnable, the filter adapts its spectral response to the graph data. We show this adaptive nature allows `KrawtchoukNet` to achieve SOTA performance on challenging heterophilic benchmarks (Texas, Cornell), decisively outperforming standard GNNs like GAT and APPNP.

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@article{goksu2025krawtchouknet,
  title  = {KrawtchoukNet: A Unified GNN Solution for Heterophily and Over-smoothing with Adaptive Bounded Polynomials},
  author = {Huseyin Goksu},
  year   = {2025},
  eprint = {2511.15327},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2511.15327v1}
}

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