ZS-TreeSeg: A Zero-Shot Framework for Tree Crown Instance Segmentation

Abstract

Individual tree crown segmentation is an important task in remote sensing for forest biomass estimation and ecological monitoring. However, accurate delineation in dense, overlapping canopies remains a bottleneck. While supervised deep learning methods suffer from high annotation costs and limited generalization, emerging foundation models (e.g., Segment Anything Model) often lack domain knowledge, leading to under-segmentation in dense clusters. To bridge this gap, we propose ZS-TreeSeg, a Zero-Shot framework that adapts from two mature tasks: 1) Canopy Semantic segmentation; and 2) Cells instance segmentation. By modeling tree crowns as star-convex objects within a topological flow field using Cellpose-SAM, the ZS-TreeSeg framework forces the mathematical separation of touching tree crown instances based on vector convergence. Experiments on the NEON and BAMFOREST datasets and visual inspection demonstrate that our framework generalizes robustly across diverse sensor types and canopy densities, which can offer a training-free solution for tree crown instance segmentation and labels generation.