Benchmarking Vision-Language Models for Automated Pathology Diagnosis and Report Generation

Yumi Lee, Harim Oh, Hyoryung Kim, Minji Kim, Eunsu Kim +50 more
9/1/2026
cs.CVcs.AI

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Abstract

The rapid advancement of vision-language models (VLMs) has accelerated progress in computational pathology; however, whole-slide image (WSI)-based pathology report generation remains limited by the scarcity of large-scale WSI--report datasets and the complexity of mapping spatially distributed visual patterns to structured clinical text. To address this, we introduce a clinically curated Pan-Asia WSI--report dataset of approximately 10,500 pairs from five institutions and establish the REG 2025 benchmark through a MICCAI challenge for systematic evaluation of multimodal models. We analyze submitted methods spanning pretrained VLMs, multiple-instance learning frameworks, hierarchical expert models, retrieval-augmented generation, and cross-modal Transformers. Rather than indicating that VLM use alone was sufficient for superior performance, the results suggest that top-performing methods benefited from structured report representations, hierarchical diagnostic decomposition, and effective multimodal grounding. We identify key limitations, including instability in quantitative attribute estimation (e.g., numeric hallucination) and a tendency toward diagnostic overspecification, with some errors resembling known diagnostic pitfalls in routine pathology. These findings establish REG 2025 as a benchmark for evaluating WSI-based structured report generation and vision-language understanding in computational pathology, providing insights for the design of clinically grounded multimodal pathology models.

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@article{lee2026benchmarking,
  title  = {Benchmarking Vision-Language Models for Automated Pathology Diagnosis and Report Generation},
  author = {Yumi Lee and Harim Oh and Hyoryung Kim and Minji Kim and Eunsu Kim and Hyeseong Lee and Junya Fukuoka and Andrey Bychkov and Jijgee Munkhdelger and Rajiv Kumar Kaushal and Ayushi Sahay and Rajni Yadav and Bharathi Prabakaran and Sulen Sarioglu and Serdar Balcı and Ilknur Turkmen and Yuri Tolkach and Christian Harder and Julian Westerdorf and Reinhard Buettner and Audun Ljone Henriksen and Sepp De Raedt and Byung Hyun Lee and Sungjin Lim and Joohoon Lee and Gwanghyun Kim and Se Young Chun and Suryakant Singh and Saarthak Kapse and Prateek Prasanna and Kyung A Kim and Yousun Kang and Sehwan Yoo and Sungman Hong and Shubham Innani and Michael Feldman and Spyridon Bakas and Ujjwal Baid and Prasad Dutande and Suhas Gajare and Bhakti Baheti and Serkan Sökmen and Ece Tuğba Cebeci and Ahmet Halıcı and Musa Balcı and Kardelen Peçenek and Srividhya Sainath and Kyongseok Jang and Messi H. J. Lee and Noorul Wahab and Bodong Du and Jiaming Zhang and Qixiang Zhang and Jang-Hwan Choi and Sangjeong Ahn},
  year   = {2026},
  eprint = {2609.00866},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2609.00866v1}
}

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