Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models

Edward D. Lee, Bryan C Daniels
1/24/2018
q-bio.QMcond-mat.stat-mechphysics.comp-ph

Official code: bcdaniels/coniii (4 stars, MIT, last commit 2018-10-23).

Abstract

ConIII (pronounced CON-ee) is an open-source Python project providing a simple interface to solving the pairwise and higher order Ising model and a base for extension to other maximum entropy models. We describe the maximum entropy problem and give an overview of the algorithms that are implemented as part of ConIII (https://github.com/eltrompetero/coniii) including Monte Carlo histogram, pseudolikelihood, minimum probability flow, a regularized mean field method, and a cluster expansion method. Our goal is to make a variety of maximum entropy techniques accessible to those unfamiliar with the techniques and accelerate workflow for users.

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Code Implementations(1)

bcdaniels/coniiiOfficial100%
MIT

Convenient Interface to Inverse Ising

41TeX, ShellApr 19, 20178 years agoMIT

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Cite this paper

@article{lee2018convenient,
  title  = {Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models},
  author = {Edward D. Lee and Bryan C Daniels},
  year   = {2018},
  eprint = {1801.08216},
  archivePrefix = {arXiv},
  url    = {https://arxiv.org/abs/1801.08216}
}

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