Joint Optimal Transport and Embedding for Network Alignment

Qi Yu, Zhichen Zeng, Yuchen Yan, Lei Ying, R. Srikant +1 more
2/26/2025
cs.AIcs.LGcs.SI

No official code found. Best implementation: yq-leo/JOENA-WWW25 (3 stars, MIT, last commit 2025-12-16).

Abstract

Network alignment, which aims to find node correspondence across different networks, is the cornerstone of various downstream multi-network and Web mining tasks. Most of the embedding-based methods indirectly model cross-network node relationships by contrasting positive and negative node pairs sampled from hand-crafted strategies, which are vulnerable to graph noises and lead to potential misalignment of nodes. Another line of work based on the optimal transport (OT) theory directly models cross-network node relationships and generates noise-reduced alignments. However, OT methods heavily rely on fixed, pre-defined cost functions that prohibit end-to-end training and are hard to generalize. In this paper, we aim to unify the embedding and OT-based methods in a mutually beneficial manner and propose a joint optimal transport and embedding framework for network alignment named JOENA. For one thing (OT for embedding), through a simple yet effective transformation, the noise-reduced OT mapping serves as an adaptive sampling strategy directly modeling all cross-network node pairs for robust embedding learning.For another (embedding for OT), on top of the learned embeddings, the OT cost can be gradually trained in an end-to-end fashion, which further enhances the alignment quality. With a unified objective, the mutual benefits of both methods can be achieved by an alternating optimization schema with guaranteed convergence. Extensive experiments on real-world networks validate the effectiveness and scalability of JOENA, achieving up to 16% improvement in MRR and 20x speedup compared with the state-of-the-art alignment methods.

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Code Implementations(1)

yq-leo/JOENA-WWW25Community100%
MIT

Implementation of "Joint Optimal Transport and Embedding for Network Alignment" in WWW25

30PythonJan 27, 202510 months agoMIT

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Cite this paper

@article{yu2025joint,
  title  = {Joint Optimal Transport and Embedding for Network Alignment},
  author = {Qi Yu and Zhichen Zeng and Yuchen Yan and Lei Ying and R. Srikant and Hanghang Tong},
  year   = {2025},
  eprint = {2502.19334},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2502.19334v1}
}

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