Towards Effective and Efficient Graph Alignment without Supervision

Songyang Chen, Youfang Lin, Yu Liu, Shuai Zheng, Lei Zou
3/9/2026
cs.LGcs.AI

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Abstract

Unsupervised graph alignment aims to find the node correspondence across different graphs without any anchor node pairs. Despite the recent efforts utilizing deep learning-based techniques, such as the embedding and optimal transport (OT)-based approaches, we observe their limitations in terms of model accuracy-efficiency tradeoff. By focusing on the exploitation of local and global graph information, we formalize them as the ``local representation, global alignment'' paradigm, and present a new ``global representation and alignment'' paradigm to resolve the mismatch between the two phases in the alignment process. We then propose \underline{Gl}obal representation and \underline{o}ptimal transport-\underline{b}ased \underline{Align}ment (\texttt{GlobAlign}), and its variant, \texttt{GlobAlign-E}, for better \underline{E}fficiency. Our methods are equipped with the global attention mechanism and a hierarchical cross-graph transport cost, able to capture long-range and implicit node dependencies beyond the local graph structure. Furthermore, \texttt{GlobAlign-E} successfully closes the time complexity gap between representative embedding and OT-based methods, reducing OT's cubic complexity to quadratic terms. Through extensive experiments, our methods demonstrate superior performance, with up to a 20\% accuracy improvement over the best competitor. Meanwhile, \texttt{GlobAlign-E} achieves the best efficiency, with an order of magnitude speedup against existing OT-based methods.

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Cite this paper

@article{chen2026towards,
  title  = {Towards Effective and Efficient Graph Alignment without Supervision},
  author = {Songyang Chen and Youfang Lin and Yu Liu and Shuai Zheng and Lei Zou},
  year   = {2026},
  eprint = {2603.08526},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2603.08526v1}
}

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