Causal Discovery for Linear Models with Latent Confounding via Multi-domain Identifiable Representation Learning

Danru Xu, Aapo Hyvärinen, Sara Magliacane
10/20/2026
cs.LGcs.AI

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Abstract

Causal discovery with latent confounding is particularly challenging, but a common setting in real-world data. In this work, we focus on linear causal models with latent confounding, represented by acyclic directed mixed graphs (ADMGs). Existing methods that fully identify ADMGs typically assume non-Gaussianity or graphical constraints, such as bow-freeness. In contrast, we propose Linear ADMG Learning (LinADMG), a framework for learning ADMGs for linear causal models through identifiable representation learning. Rather than relying on non-Gaussianity or bow-freeness, LinADMG leverages multi-domain settings to identify the noise variables. We show that the identifiability of the noise variables is sufficient for recovering all direct causal relations, and that, under an additional latent-confounding no-cancellation condition, LinADMG can identify the whole ADMG. We implement LinADMG with four identifiable representation learning approaches from the literature and validate the methods on simulated and semisynthetic datasets.

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@article{xu2026causal,
  title  = {Causal Discovery for Linear Models with Latent Confounding via Multi-domain Identifiable Representation Learning},
  author = {Danru Xu and Aapo Hyvärinen and Sara Magliacane},
  year   = {2026},
  eprint = {2610.28134},
  archivePrefix = {arXiv},
  url    = {http://arxiv.org/abs/2610.28134v1}
}

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